Welcome to NGS 2014 Tutorial - Databases’s documentation!

Contents:

• So you want to get some sequencing data in NCBI?
  • The challenge
  • What is an API and how does it relate to NCBI?
  • Automating with an API
  • Exercise - Downloading data
  • Comment on Genbank files
• MG-RAST and its API
  • Example Usage
  • Exercise - Download
  • Working with Annotations
  • A note on JSON
  • Exercise - linking MG-RAST to taxonomy

Indices and tables

• Index
• Module Index
• Search Page